Using StringTie to analyze RiboSeq data
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3 months ago
Julie • 0

Hi. I have a mRNASeq dataset and a corresponding RiboSeq dataset and I was wondering if I could analyze both (separately of course) using StringTie. I know that StringTie was designed for de novo transcriptome assembly from mRNASeq data, but I didn't know if it would be suitable for RiboSeq data as well. We'd want to use StringTie to generate transcripts de novo and then map to existing genome's gene/transcript gffs for both datasets. Does anyone have any experience doing this?

Thanks, Julie

StringTie RiboSeq • 99 views

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