Discovering chromosome name in snpEff database
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4 months ago
ziziqolo ▴ 10

Hey dear biostars,

I wonder how can I find out how to discover the name of the chromosome in the snpeff database from it bin file?

Thank you

snpEff • 182 views
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it looks like the names of the chromosome are in the bin filename. Here is my directory for human:

sequence.10.bin sequence.11.bin sequence.12.bin sequence.13.bin
sequence.14.bin sequence.15.bin sequence.16.bin sequence.17.bin
sequence.18.bin sequence.19.bin sequence.1.bin sequence.20.bin
sequence.21.bin sequence.22.bin sequence.2.bin sequence.3.bin
sequence.4.bin sequence.5.bin sequence.6.bin sequence.7.bin
sequence.8.bin sequence.9.bin sequence.bin sequence.HG1091_PATCH.bin
sequence.HG1257_PATCH.bin sequence.HG1287_PATCH.bin sequence.HG1424_PATCH.bin sequence.HG1433_PATCH.bin
sequence.HG1436_HG1432_PATCH.bin sequence.HG1459_PATCH.bin sequence.HG1497_PATCH.bin sequence.HG375_PATCH.bin
sequence.HSCHR5_1_CTG1.bin sequence.HSCHR6_MHC_APD.bin sequence.HSCHR6_MHC_COX.bin sequence.HSCHR6_MHC_DBB.bin
sequence.HSCHR6_MHC_MANN.bin sequence.HSCHR6_MHC_MCF.bin sequence.HSCHR6_MHC_QBL.bin sequence.HSCHR6_MHC_SSTO.bin
sequence.X.bin sequence.Y.bin
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