Question

SRA paired downloading issue

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2.3 years ago

sara • 0

When downloading samples from ncbi the samples sequence looks like this

TG2011120320121002130002000

What is the problem

paired SRA • 606 views

ADD COMMENT • link 2.3 years ago by sara • 0

score 2 · Answer 1 · 2022-01-23

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2.3 years ago

GenoMax 141k

That is data in color space from a technology called SOLiD. Stay away from it if you can. Current aligners do not support this type of data. See: Transforming And Manipulating Color Space Reads

ADD COMMENT • link 2.3 years ago by GenoMax 141k

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Thank you !!!

ADD REPLY • link 2.3 years ago by sara • 0