aligning 2 fasta file genomes
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3 months ago

Hi all, Is there a way to align 2 fasta file genomes? Since bwa and bowtie2 cant read large genomes with more than one sequence. The fasta files are about 2GB in size. Taimur

Linux Genome Bioinformatics • 237 views
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You can also check programs like mauve (LINK) and lastz (LINK).

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3 months ago
guillaume.rbt ▴ 980

There are tools specifically designed to align genomes, mummer for example.

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