Where can I find an annotation table for human gencode ensemble gene ids to gene name/description?
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3 months ago
O.rka ▴ 540

All of the resources on BioStars and Ensembl I am seeing require me submitting lists to some REST or server. Is there anywhere I can just download the raw annotation table?

I am using hg38 v39 http://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_39/

I'm looking for a table that has, at the very least, [gene id]<sep>[gene symbol]<sep>[full gene name]

fastq annotation genomics rnaseq • 367 views
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you can use ensembl+biomart without a list of identifiers.

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Do you have a link out to any tutorials by any chance?

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3 months ago
GenoMax 115k

BioMart --> Ensembl Genes --> Human Genes --> Attributes (in left column) --> Select Gene Stable ID, Gene Name, Gene Description (or anything else you want, right pane) --> Hit Count --> 68005 as of today --> Results ----> (Choose if you need unique ones) --> Send to File --> Choose format (TSV,CSV etc) --> Provide file name.

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