How extract a specific part of sequence from a gtf file?
2
0
Entering edit mode
2.2 years ago

I want to extract a specific part of sequence from a gtf file not all sequences. I used gffread, it extract all sequences but I need only special part. please help me how can I do this.

Thanks

GTF • 773 views
ADD COMMENT
0
Entering edit mode

post few lines from gtf with sequences.

ADD REPLY
0
Entering edit mode
ADD COMMENT
0
Entering edit mode
2.2 years ago
liorglic ★ 1.4k

gffread from the Stringtie package also has this functionality.

ADD COMMENT

Login before adding your answer.

Traffic: 2592 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6