Hello, I am wondering how I could use the WGCNA package to explore a dataset derived from Nanostring (normalised), 486 detected targets, three time points (12 replicates in each). i.e. how could I prepare the data, all the tutorials are very much focused on RNASeq or microarray data.
If properly normalized and
log2 transformedWGCNA can be applied to different kind of data: amplicon sequencing, metabolomic, proteomic, abundance data from metagenomic sequencing. The tutorial will not change.
I would give it a try but I would not rely only on WGCNA.