Run trimmomatic with Trinity
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3 months ago
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I want to run trimmomatic with Trinity, but there's some error that I can't solve.

 “ILLUMINACLIP:/tempwork173/r09b45015/anaconda3/envs/rnaseq/share/trimmomatic/adapters/TruSeq3-PE.fa:2:30:10 SLIDINGWINDOW:4:5 LEADING:20 TRAILING:3 MINLEN:25”
**Error, do not understand options: SLIDINGWINDOW:4:5 LEADING:20 TRAILING:3 MINLEN:25”**

Can anyone help? Thanks a lot

Trinity • 172 views
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likely something is wrong with that parameter name.

Did you look up the correct syntax for this?

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