The Biostar Herald publishes user submitted links of bioinformatics relevance. It aims to provide a summary of interesting and relevant information you may have missed. You too can submit links here.
This edition of the Herald was brought to you by contribution from Istvan Albert, and was edited by Istvan Albert,
AI Does It Best - by Tomas Pueyo - Uncharted Territories (unchartedterritories.tomaspueyo.com)
A tour of examples where AI produces amazing results.
submitted by: Istvan Albert
GitHub - csoneson/ARMOR: Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data (github.com)
ARMOR (Automated Reproducible MOdular RNA-seq) is a Snakemake workflow, aimed at performing a typical RNA-seq workflow in a reproducible, automated, and partially contained manner. It is implemented such that alternative or similar analysis can be added or removed.
submitted by: Istvan Albert
Long read sequencing (www.biomedcentral.com)
In this new special issue in Genome Biology, we present a series of papers using Long-read sequencing.
submitted by: Istvan Albert
Bacon: a comprehensive computational benchmarking framework for evaluating targeted chromatin conformation capture-specific methodologies | Genome Biology | Full Text (genomebiology.biomedcentral.com)
Here we present a comprehensive benchmark framework, Bacon, to evaluate the performance of several computational methods. Finally, we provide practical recommendations for users working with HiChIP and/or ChIA-PET analyses.
submitted by: Istvan Albert
Statistics or biology: the zero-inflation controversy about scRNA-seq data | Genome Biology | Full Text (genomebiology.biomedcentral.com)
Researchers view vast zeros in single-cell RNA-seq data differently: some regard zeros as biological signals representing no or low gene expression, while others regard zeros as missing data to be corrected.
submitted by: Istvan Albert
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