Entering edit mode
2.1 years ago
colindaven
6.2k
Dear community,
does anyone know of a nanopore variant caller which can perform multisample (not single sample) SNV calling on long reads (similar to eg Freebayes for short reads) ?
I know of longshot, clair3, Nanocaller, PEPPER etc but haven't seen one which can do true multisample calling, which has advantages vs single sample calling + VCF merging.
Thanks.