Entering edit mode

13 months ago

bioinfo89
▴
50

Hi All,

I am currently working on ChIAPET data of different cancer cell lines for a specific protein of interest. For the same, I am required to perform some statistical analysis which requires me to calculate all the possible chromatin interactions in each cell lines and then get a significance p-value. The observed number of chromatin interactions I have.

I am not sure how to calculate the above-mentioned total possible number of chromatin interactions in a sample. Can anyone help me with this part?

Thank you!