clustering samples
0
0
Entering edit mode
7 months ago
gs000095 • 0

Hey all,

I have gene expression data for ~1000 samples. I am interested in a particular gene and I would like to see how these samples cluster based on this gene's expression. I was wondering :

  1. If its correct to do it this way?
  2. If yes, how should I perform the clustering? Should I leave the gene in the row and samples in the column and then perform hierarchical clustering ?

I look forward to your response and suggestions,

Best, SG

clustering • 318 views
ADD COMMENT
2
Entering edit mode

A single gene? Wouldn't something simple like quantiles do here and then you simply check to which quantile the sample belongs? I mean, with only one gene you cannot really define clusters, do you?

ADD REPLY
0
Entering edit mode

Mixture of distributions could do, if there is any underlying distribution

ADD REPLY

Login before adding your answer.

Traffic: 1862 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6