Filter out individuals of the multisample VCF file with a high proportion of missing calls by bcftools
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5 months ago
Denis ▴ 230

Hi there! I'd like to get rid of individuals with a high proportion of the missing genotype calls from my VCF file. I usually use the plink software for that, but wondering if this option is available in bcftools?

SNP VCF missing_data genotyping • 173 views