I am new in the genomics data analysis field, I have a question regarding the tools for joint genotyping. I have WES data for 60 case samples (human, none of them are related). I am trying to find possible rare variants and I would like to do joint genotyping. Samples are unrelated and variants are somatic.
Could you offer a program or tool for this task? I usually follow GATK Best Practices Guidelines, but I could not see a tool for that.