Entering edit mode
2.1 years ago
J
▴
20
I am trying to get the LD R2 values for a series of SNPs so I have been using LDLinkR. I am finding that some SNPs return errors using the API and give NA results, such as rs10716630, rs35847220. It is important that I be able to calculate the R2 value between these SNPs and many others. I have read that you can use Plink to do this alternatively, but now I am having a hard time locating the 1000 Genomes reference panel for European and African ancestry. Any assistance on this would be appreciated, it is holding up my research.
