virus classification
2
0
Entering edit mode
5 months ago
AUROSHIS • 0

I have a lots of data about species of viruses and I want to know about the family information of those viruses. I have downloaded the ICTV classification table of 2020. Still I am not able the get the information about the family information of those virus species.

Streptococcus virus EJ-1            #N/A
Lactobacillus virus Lc-Nu   #N/A
Lactobacillus virus phiAT3  Siphoviridae
Streptococcus virus O1205   Siphoviridae
Mycobacterium virus Pacc40  Siphoviridae
Sinorhizobium virus PBC5    #N/A
Abelson murine leukemia virus   #N/A
Salmonella virus SETP3                Siphoviridae
Clostridium virus phiC2                   #N/A
Enterobacteria virus N4                     #N/A
Invertebrate iridescent virus 3         Iridoviridae
Staphylococcus virus Twort        Herelleviridae
Bacillus virus SPO1                        Herelleviridae
Vibrio virus VHML                         Myoviridae
Streptococcus virus DT1 Siphoviridae
Yersinia virus L-413C   #N/A
Chlamydia virus CPAR39  Microviridae
Bacillus virus B103 Salasmaviridae
Streptococcus virus PH10    #N/A
Prochlorococcus virus P-SSM2    #N/A
Lactococcus virus TP901-1   #N/A
Streptococcus virus phi3396 #N/A
Flavobacterium virus 11b    #N/A
Streptococcus virus 5093    #N/A
Staphylococcus virus phiSauS-IPLA35 #N/A

Like this I am getting . Can anyone please help me out .

classification • 326 views
ADD COMMENT
0
Entering edit mode
5 months ago

Just because some names are not found in the NCBI taxonomy database due to naming inconsistency, e.g. Streptococcus phage EJ-1 is in, but Streptococcus virus EJ-1 is not.

ADD COMMENT
0
Entering edit mode
5 months ago

Taxonomic information in ICTV is manually curated and thus it usually lags behind virus data from NCBI. There are many virus species in NCBI that have not yet been covered by ICTV.

As shenwei365 suggested, you can get taxonomic information of your viruses from NCBI Taxonomy.

ADD COMMENT
0
Entering edit mode

So any command line option to grep the information from NCBI Taxonomy ?

ADD REPLY

Login before adding your answer.

Traffic: 1268 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6