How to change the score of reads to be negative on the antisense chain of the genome from bam file
0
0
Entering edit mode
2.1 years ago
17318598206 ▴ 20

hello everyone, i have chip-seq dada, i have got the BAM file by mapping, then i extracted and compared reads on the forward and reverse strands,

now i want to change the score of reads to be negative on the reverse strand from bam file, so that allows me to visualize the peak in different directions,like this: https://data.cyverse.org/dav-anon/iplant/home/xucaoling/forward_reverse.png

so, how to make it?

thank you!

reverse score strand negative chip-seq • 340 views
ADD COMMENT

Login before adding your answer.

Traffic: 2371 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6