minion infer 3' adapter sequence output error
0
0
Entering edit mode
2.1 years ago
Jichen Wen ▴ 30

Hi all, I used Kraken minion(version 15-065) to infer 3' adapter sequence but it output something that not consistent with the example output in manual.

My output

$ minion search-adapter -i rep1.R2.fastq.gz 
[minion] reading reads
.................................................  1
.................................................  2
[minion] set workspace to size 34854
[minion] connected component analysis
[minion] building consensus sequences
have 50

Standard output

$ minion search-adapter -i data.fq.gz -adapter <SEQUENCE>
criterion=sequence-density
sequence-density=25.68
sequence-density-rank=1
fanout-score=21.54
fanout-score-rank=9
prefix-density=49.06
prefix-fanout=21.5
sequence=TCGTATGCCGTCTTCTGCTTG

I'm wondering it's my fastq file problem or minion problem.

Many thanks!

Kraken minion • 384 views
ADD COMMENT

Login before adding your answer.

Traffic: 2715 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6