where to find GRCh38 for 1000 Genomes
2
0
Entering edit mode
2.2 years ago
raalsuwaidi ▴ 100

Hi,

in the previous GRCh37 build from 1000Genomes files were available in vcf format by chromosome through their portal. now for the GRCh38 i cannot seem to find the files.

any help on where i can find the files?

VCF GRCh38 1000Genomes • 946 views
ADD COMMENT
2
0
Entering edit mode

thank you so much. would it be possible if you can point me to where i can fine the map file? i will need it to be used in the imputation process.

ADD REPLY
2
Entering edit mode
2.2 years ago

A plink2-formatted version of the current GRCh38 1000 Genomes phase 3 callset, preserving all annotations and phase information, is now available at https://www.cog-genomics.org/plink/2.0/resources . (Note that you can use --export vcf bgz to generate VCFs from this.)

ADD COMMENT

Login before adding your answer.

Traffic: 859 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6