MEGAHIT
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4 months ago
Jamal • 0

Hello guys, How can recover the number of non assembled reads and the number of assembled reads with MEGAHIT.

Thank you

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4 months ago
h.mon 34k

You can't. You can estimate by mapping the original reads into the assembly, and counting mapped and unmapped reads, but reads mapped isn't the same as reads used in the assembly.

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