Best method for downstream GSEA to adjust the gene set size to 500 from a 58,000 mark RNA-seq dataset
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2.2 years ago
RZ • 0

Hi,

I have a dataset with ~58000 genes. I used TMM to normalize the dataset to prepare it as the GSEA input. What is the best method to filter the library after TMM so the input would be ~500 genes only?

Thank you!

gene-set GSEA • 308 views
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