Hi!
I am working with an H5 file generated with targeted scDNA-seq using MOSAIC tool from Tapestry MissionBio (https://missionbio.github.io/mosaic/index.html) and in the custom panel for sequence it has been included and the area where a translocation occurs. The software of Tapestry detects this translocated area as 150 individual variants.
I have been able to rename these IDs from their individual base mutation name to a custom "chr18:translocation", but still, there are 150 variants with this name.
How can I collapse all these 150 variants to just one, as it was only one variant which defines the whole area of translocation?
I don know how to manipulate the H5 in order to achieve this and obtain a functional H5 object to continue with the mosaic pipeline.
I would appreciate any help with this! Kind regards!
