Error in running Prokka through Galaxy
0
0
Entering edit mode
2.1 years ago
anasjamshed ▴ 120

I have uploaded my genome sequence at the galaxy and then I run Prokka on this genome but it's giving me these errors:

errors

How can I solve these to execute prokka properly?

Prokka • 770 views
ADD COMMENT
0
Entering edit mode

Click on bug icon on a failed job and post the output here. Or click on "i" button and there would be stderror link once information loads. Post it here.

Galaxy has a separate help forum. Please reach that forum for better help in using galaxy.

ADD REPLY
0
Entering edit mode

see this: error

ADD REPLY
0
Entering edit mode

Error is outdir/prokka.gbf is not found, because of which sed command is failing. Check if you need to supply gbf file separately. If you don't have to, reach out the galaxy wrapper developer for prokka.

PS: Never post images of the text. Even when you posted image of the error, at least you could have minimize right panel to make center pane text bigger.

ADD REPLY

Login before adding your answer.

Traffic: 1718 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6