Question: How To Extract Secondary Structure Regions Based On Dihedral Angles From Multiple Pdb Files ?
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gravatar for nahsivar
6.2 years ago by
nahsivar10
Spain
nahsivar10 wrote:

How to extract secondary structure regions based on dihedral angles from multiple PDB files ?

For a single PDB file, secondary structure could easily be obtained based on PDB Header or DSSP/STRIDE definitions. Are there any tools to extract Dihedrals based secondary structures for multiple PDBs (like some 10,000 of them )

Are there any databases or datasets of previously extracted secondary structure fragments (not coils) ?

pdb • 2.8k views
ADD COMMENTlink modified 6.2 years ago by David Westergaard1.4k • written 6.2 years ago by nahsivar10
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gravatar for David Westergaard
6.2 years ago by
Copenhagen, Denmark
David Westergaard1.4k wrote:

Not quite sure I understand your question, but maybe sstruc can do the job. It at least outputs the dihedral angles. It's part of the JOY package for protein structure analysis.

ADD COMMENTlink written 6.2 years ago by David Westergaard1.4k
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