Fastp

Question

[nishimalhotra2612]

How to do the fastp analysis of multiple files instead of just one single file?

[GenoMax]

Example (with a different program) to get you started: Trimmomatic job script to run on multiple pair end read file

[nishimalhotra2612]

thanks for the suggestion

Answer 1

[Istvan Albert]

The manual instructs you on how to run it in paired and mode.

To run on multiple files execute the program on each file manually or automate that in some fashion: for loops in bash, GNU parallel, makefiles etc

[nishimalhotra2612]

thanks for the suggestion i made a snakemake file for using it with multiple files