I am trying to run fastqc from my home directory using the command line. I do not have access to the root directory. I have downloaded fastqc zip file and unzipped it. When going into the FastQC directory, the following options are available:
Configuration, LICENSE_JHDF5.txt cisd-jhdf5.jar net uk Help README.txt fastqc org INSTALL.txt RELEASE_NOTES.txt fastqc_icon.ico run_fastqc.bat LICENSE.txt Templates jbzip2-0.9.jar sam-1.103.jar
However, when I try to run fastqc, an error message appears:
Command 'fastqc' not found, but can be installed with: apt install fastqc Please ask your administrator.
Is there something that I am doing wrong? How can I install fastqc in your home space as you don't have root on the server and run the programme?