How Can I Visualize Sashimi Plots In Igv Genome Browser ?

Question

[samsara]

IGV 2.3.10 has incorporated Sashimi plots for RNA-Seq alignments. I have been using MISO and Sashimi plots when Sashimi plots has not been incorporated in IGV. Since the plot feature is incorporated in IGV, I am interested visualizing RNA-Seq data in IGV. I did not find any information about visualizing them in IGV. It would be a great help if someone has done it and would like to share the idea to me. Thanks in advance.

So, my question is: How can i visualize sashimi plots in IGV Genome Borwser ?

Answer 1

[Nicolas Rosewick]

pretty simple. Go to the region you want to plot. Right-click, and click on sashimi plot

[Devon Ryan]

Since someone just asked me about this, please note that you need to right click on the track with the reads rather than the track with the coverage.

[samsara]

Thanks a lot. I did not expect it to be this simple :D

[Nicolas Rosewick]

You're welcome ;)

Answer 2

[aimanbarki]

Here is the tutorial for IGV and Sashimi plot