Entering edit mode
12 months ago
leranwangcs ▴ 70
In my dataset, the number of samples from each individual are different, something like this:
I want to compare active and inactive status, but as you can see, patient 1,2,3 has 1 samples in each status, whereas patient 4,5,6,7,8 contribute multiple samples in each status.
I wondered if I can just go ahead and do the comparison between active and inactive, without considering the different sample sizes from each individual? Or if this would be a problem and mess up my comparison result?
What kind of assay is this? RNA-seq?
Hi, this for microbiome data.
They are actually different, that one is a specific question for DESeq.