Tool:Roakvar: do genomic variant analyses with R
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5 days ago
Ryangguk Kim ▴ 60

Roakvar is an R package for genomic variant analysis. It is an R wrapper for OakVar, a Python-based genomic variant analysis platform (OakVar is in turn further developed from OpenCRAVAT).

Without leaving the RStudio, VCF files can be annotated and the result can be pulled into an R data frame, for example.

See https://github.com/rkimoakbioinformatics/roakvar for Roakvar installation and usage, including the example.

See https://oakvar.readthedocs.io for OakVar installation and usage.

All CLI commands of OakVar is available as R functions through Roakvar, including a GUI server.

Comments and feedback are welcome.

oakvar genomics roakvar variant analysis • 175 views
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For reference, oakvar (python) is fork of opencravat (variant interpretation software )

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