I have around 70 samples which have undergone WES.
I have a list of the adapters used for each sample; however, it seems that the sequencing company used lots of different adapters for each sample (I.e they all used different adapters). Originally, I was going to use the adapter sequences as an input for fastp and then run it in parallel. However, because the adapter sequences are all different, I don't think I can do this.
Is there a way to just run fastp on default to find adapters or is it good practice to provide each individual adapter sequence?