Software to draw protein domains of proteins
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6 weeks ago

Can anyone help me how to draw domains of proteins? which software i can use? I am looking for a tool that can plot a protein domain structure (similar to how it is done in Pfam or Smart) .

Protein domains • 412 views
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if you run your proteins through InterproScan you will get be default an image as output which shows the location of the domains on your input protein.

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6 weeks ago
Mensur Dlakic ★ 20k

If you want Pfam-like domain representations, their site has as option to do it. One has to enter domain boundaries, colors, the style and simply click "Generate graphic."

https://pfam.xfam.org/generate_graphic

ProSIte also does a nice job:

https://prosite.expasy.org/mydomains

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6 weeks ago
cmdcolin ★ 2.2k

tools mentioned by other users are great, a couple more tools here https://cmdcolin.github.io/awesome-genome-visualization/?latest=true&tag=Protein

including https://github.com/joiningdata/lollipops

and http://ibs.biocuckoo.org/

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