HI! Greetings to everybody.
I'm running a RNA-seq analysis and come to my mind a existential question, I have one group "control" and the experimental group "tricot" (my focus group). When I run:
I got, for example the following gen:
which means that is sub-expressed, but what it means the digits under titles "treatment" "treatmen2"? So, this gen is sub-expressed in my treatment group?
because when I got the Heatmap the same gen is up-expressed following the color option:
where yellow is for treatment group (up-expressed) and purple (sub-express) for control which means the table is wrong or am I misunderstanding my results?
by the moment I appreciate your attention and any idea is well welcome :) .