Entering edit mode
23 months ago
kgoss
▴
10
Hey everyone,
I'm looking to use output from Illumina Global Screening Array (GSA) as input for the R demuxlet package to distinguish five donors. Has anyone ever done this? If so, any tips/tricks? I've not dealt with GSA output before, so I'm not even sure what the files contain.
GSA is in array. I am not sure if demultiplexing applies here. For GSA arrays, you can use Genome studio for SNV and CNV calling.