Hello, I am trying to use panX for my pangenome analysis. After installing all the dependencies, when I run the test.sh, I am getting the following error.
sh run-TestSet.sh cat: '/home/saiful/pan-genome-analysis/data/TestSet/protein_faa/*faa': No such file or directory Traceback (most recent call last): File "./panX.py", line 277, in <module> myPangenome.clustering_protein_sequences() File "/home/saiful/pan-genome-analysis/scripts/pangenome_computation.py", line 139, in clustering_protein_sequences self.diamond_identity, self.diamond_query_cover, self.diamond_subject_cover, self.diamond_path, self.mcl_inflation) File "/home/saiful/pan-genome-analysis/scripts/sf_cluster_protein.py", line 232, in clustering_protein return parse_geneCluster(cluster_fpath, cluster_dt_cpk_fpath) File "/home/saiful/pan-genome-analysis/scripts/sf_cluster_protein.py", line 126, in parse_geneCluster with open(input_fpath, 'rb') as infile: IOError: [Errno 2] No such file or directory: '/home/saiful/pan-genome-analysis/data/TestSet/protein_faa/diamond_matches/allclusters.tsv'
Where is the problem?Can anyone suggest me? Is there any better tools for pangenome analysis?