How to search and identify the function of DEGs
1
0
Entering edit mode
23 months ago

How to retrieve and identify the function of DEGs? What are the different types of tools available?
function functional annoatation DEGs • 556 views
ADD COMMENT •
0
Entering edit mode

If you refer to pathways/GO analysis, I would recommend GSEA.

ADD REPLY •
0
Entering edit mode
23 months ago

For GO/pathway analysis and GSEA (as mentioned in a previous reply) I've always found webgestalt really easy to use.
ADD COMMENT •
0
Entering edit mode

On WebGestalt you perform a pre-ranked GSEA, where you input already computed logFC values for each gene. In a proper GSEA you instead input a matrix or normalized read counts with all genes as rows and all replicates as columns.

ADD REPLY •

Login before adding your answer.

Similar Posts
Loading Similar Posts
Traffic: 2701 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6