SRR sample ID
0
0
Entering edit mode
4 weeks ago
mahsa • 0

Does anyone know how I can convert SRR sample Id to TCGA sample barcode ?

TCGAbiolinks RNA-seq sampleID R cancer programming • 215 views
ADD COMMENT
0
Entering edit mode

By SRR you mean SRA run file ID? Can you post some of the Ids here?

ADD REPLY
0
Entering edit mode

yes. for example :

**SRR1474440 SRR1447416 SRR1430860 SRR1345871 SRR1446996 SRR1459761 SRR1355997 SRR1359821**
ADD REPLY
0
Entering edit mode

These IDs come from GTEx through SRA. So they are not part of TCGA and you can not map these SRR ids to the TCGA barcode!

ADD REPLY

Login before adding your answer.

Traffic: 894 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6