Entering edit mode
22 months ago
Azhar Jameel
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0
A USER ERROR has occurred: Fasta dict file file:///scratch/user/azharjameel/Pheasant_GBS_Part-1/ref/ncbi-genomes-2022-05-19/GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b_genomic.dict for reference file:///scratch/user/azharjameel/Pheasant_GBS_Part-1/ref/ncbi-genomes-2022-05-19/GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b_genomic.fna does not exist. Please see http://gatkforums.broadinstitute.org/discussion/1601/how-can-i-prepare-a-fasta-file-to-use-as-reference for help creating it.
I have all formate of files in the reference directory including genome.dict but still not running show the error, Please resolve the issues.
what is this tag "hannah" ?
did you read https://gatk.broadinstitute.org/hc/en-us/articles/360035531652-FASTA-Reference-genome-format
I've changed that tag to GATK. It probably was a language barrier thing.