convert csv to fasta format using python

Question

[Abdellrhmanakl]

i have a tsv file and i want to convert it to fasta please help

Moderator edit note: I have removed the link as it provided a direct link to an archive download and could present a risk.

Example data should be provided as a text snippet

[liorglic]

Please include a short sample from your input and desired output.

[jv]

https://biopython.org/wiki/SeqIO

[bngan]

SeqIO.convert doesn't work with TSV's. I would recommend removing the tabs via iteration then joining the lists together in a new fasta file.

Hope this helps.

[jv]

SeqIO can read and write tab-delimited sequence files and it is my understanding that a TSV file is a tab-delimited file so I'm not sure what the issue would be