How to install PEERTOOLS in a cluster?
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4 weeks ago
fernandogs97 ▴ 10

Ihave one problem installing peertools for creating expression based prediction models. I have been following the instructions described in https://github.com/hakyimlab/peer but I am not able to install the software as a work in a high performance cluster (without admin permissions). When I reach the step of make install I have this message

file INSTALL cannot copy file "/home/otras/fmx/fgs/LUSTRE/MetaXcan_tutorial/MetaXcan/software/peer/build/src/libpeerlib.a" to "/usr/local/lib/libpeerlib.a": Permission denied. After reading I have tried to install the software in other folder with -DCMAKE_INSTALL_PREFIX but when I am not able to execute the software. Can anybody help me?

linux Peertools GWAS predictdb unix • 260 views
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What version of R are you using?

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4.0.4 version but also tried with 2.5 and 3.5 version without success

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Last year, after a bit of difficulty I was able to get it to work on R version 3.6 on our University HPC with the help of the admins. Perhaps you should seek help from your HPC admins. Another option would be installing and running it on a personal computer.

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Thank you for your help, just if anyone see this I finally decided to use the R version of this program following the instructions described here "https://github.com/mz2/peer/issues/9"

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