How to provide read1 and read2 fastq files from two lanes to kallisto | bustools?
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2.2 years ago

Hi All,

I was wondering how should I provide 10X read1 and read2 fastq files from both lanes to the kb count function of kallisto | bustools?

Thanks very much!

kallisto 10X bustools scRNA-seq • 868 views
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Entering edit mode
2.2 years ago

It would just be space separated lane pairs. L001_R1_001.fastq.gz L001_R2_001.fastq.gz L002_R1_001.fastq.gz L002_R2_001.fastq.gz, etc.

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Thank you!

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