CTCF sites TAD

Question

[GK1610]

Does anyone know a resource or table of annotated TADs in human cells? like a) insulation scores b) CTCF binding motif orientation c) chromatin marks enrichment like H3K36me3

Answer 1

[Jean-Karim Heriche]

I think Ensembl has CTCF binding sites but maybe not additional info of relevance to you. Then there's TADKB. The paper describing the TADCompare R package references a few data sets that may also be relevant. You could look for other TAD-related software and see whether they point to useful data sets.

EDIT: forgot to mention that there's some HiC data in ENCODE so there may also be TAD annotations.