Error in createArrowFiles ArchR Analysis
0
0
Entering edit mode
22 months ago

So I'm currently using ArchR for a scATAC-seq analysis, however once I enter my files (i.e. fragment1.tsv.gz, fragment2.tsv.gz, etc.) as the inputFiles, I receive the error after entering the command:

ArrowFiles <- createArrowFiles(
  inputFiles = inputFiles,
  sampleNames = names(inputFiles),
  minTSS = 4,
  minFrags = 1000, 
  addTileMat = TRUE,
  force = FALSE,
  addGeneScoreMat = TRUE
  )

1. In sprintf"%s Reading TabixFile %s Percent", prefix, round(100 * one argument not used by format ' %s Reading TabixFile %s Percent'

. . .

10. In sprintf"%s Reading TabixFile %s Percent", prefix, round(100 * one argument not used by format ' %s Reading TabixFile %s Percent'

I've stayed up hours converting to .tsv and back to .tsv.gz hoping that may alleviate the issue. Nothing.

snatac-seq archr scatac-seq archrgenome atac-seq • 685 views
ADD COMMENT

Login before adding your answer.

Traffic: 1680 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6