Where can I find single cell genome sequencing?

Question

[d]

I am interested to know if there is a repository of only single cell genomic sequencing as open source or for students research (phd/bachelor's) Thank you

Answer 1

[lieven.sterck]

Single cell data is in essence not much different from 'normal' RNAseq. You can thus find them in the same sort of repositories: ENA, SRA, ...

You will need to specify when querying them that you are looking for scRNAseq.

EDIT: this might not all be completely relevant in the case of genome single cell data

[Ram]

Is OP looking for sc DNA seq? (as opposed to scRNAseq)

[GenoMax]

genomic word in the question certainly seems to imply so.

https://www.ncbi.nlm.nih.gov/sra/?term=SAMN14945175 has sequence data from single human cells from this paper https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02406-y

[lieven.sterck]

right, I missed that ....

[d]

Thank you very much to everyone!