When subsampling paired-end .fastq.gz files using
reformat.sh from BBMap/BBTools, I get this error message:
[W::bgzf_read_block] EOF marker is absent reformat.sh
I've checked the input files with
gunzip -t, no error. The input files are a concatenation of
bcl2fastq outputs from two lanes.
reformat.sh seems to complete with no error code, but is this error message safe to ignore? Similar report in another post.
Thanks for help!