Hello the community,
I am working in pathogens detection, and we need to find the best solution for saving and sharing data and running workflows. We on an Azure cloud but I don't know if it is the best solution.
What is the better cloud solution (gcp, terra, azure, aws..)?
I would like to know if there are possibilities to install our bioinformatics tools in a directiory, and run our own pipelines?
For example, I need to run wgMLST analysis so I need to tools like fastqc, trimmomatic, spades, chewbbaca and grapetree. Or install them by miniconda3 in different environnments. I would like them in a specific directory so my script could reach them. Is there a possibilty like this in using a cloud or I need to run them by Docker?