Entering edit mode
21 months ago
pavelasquezv
▴
50
Hi all,
I need to perform a sum with values from several outputs of a program. The loop is the following and it's perfect:
cat lista | while read l; do vdb-dump $l --info; done
However, I need to select the size values and perform a sum to get the total value of the files. In this case there are only two.
acc : SRR3900953
path : https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR3900953/SRR3900953
size : 339,610,771
type : Table
platf : SRA_PLATFORM_ILLUMINA
SEQ : 4,941,237
SCHEMA : NCBI:SRA:Illumina:tbl:phred:v2#1.0.4
TIME : 0x000000005787d950 (07/14/2016 13:26)
FMT : Fastq
FMTVER : 2.6.3
LDR : fastq-load.2.6.3
LDRVER : 2.6.3
LDRDATE: May 16 2016 (5/16/2016 0:0)
acc : SRR000001
path : https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR000001/SRR000001
size : 312,527,083
type : Table
platf : SRA_PLATFORM_454
SEQ : 470,985
SCHEMA : NCBI:SRA:_454_:tbl:v2#1.0.7
TIME : 0x0000000055248a41 (04/07/2015 20:54)
FMT : SFF
FMTVER : 2.4.5
LDR : sff-load.2.4.5
LDRVER : 2.4.5
LDRDATE: Feb 25 2015 (2/25/2015 0:0)
The result should be total size = 652,137,854
Many thanks,
It's fantastic my friend, thank you very much!