Hi, I am in charge to find presence of specific genes in 600.000 Salmonella's genomes. Some people advised me to use COBS for the indexing So I used it on few genomes just for training
But I don't really understand the output...
I copied a subsequence (55 bp) from one of my genomes, and run COBS to see if it get it. In the output I got 24 (see bellow).
**output:** SRR18349609 24 SRR18349610 24 SRR18349611 24
Is that mean it got 24 hits on my 55bp query?
And Is it possible to get more information in the output, like e/p value, location etc.. (like blastn)
Thank you for all!!