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21 months ago
pb
•
0
Hello, I want to convert a TDF to bedgraph using igvtools with the IGV interface. From the tools option, this is not available. Any help?
Hello, I`ve tried this but it always gives me an error message saying:
I`ve double checked the spelling and the capitalization and it looks fine. This was why I was hoping to use the IGV Interface instead...
Looks like you are using
modules
system for software. Is module for IGV not installed properly? What do you see when you trywhich igvtools
after loading the module forigv
?It says that IGVTools does not exist in my folder. I redownloaded the command line from the website (https://software.broadinstitute.org/software/igv/download) but it still did not work. Any more tips?
Download from here: https://software.broadinstitute.org/software/igv/download and then use https://software.broadinstitute.org/software/igv/igvtools_commandline
IGVtools is not IGV, it's two separate tool/toolkits.