Is it possible to use RSEM with BAM files from STAR alignment?
0
0
Entering edit mode
5 days ago
knowNot • 0

I am trying to use RSEM for quantification of expression levels and the files I have are BAM from STAR alignments. Would I need to run both "rsem-prepare-reference" and "rsem-calculate-expression" for this, or is the latter sufficient? Secondly, what are the options I need for successfully running these calculations?

I am very new to computational methods, please do excuse the naivete of my dilemma.

Thanks!

RSEM alignment Pre-computed STAR • 79 views
ADD COMMENT

Login before adding your answer.

Traffic: 1223 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6