Entering edit mode
21 months ago
drbioengineer
•
0
For example, the Organism feature of the 6HX5 protein is known as Homo sapiens.
I printed the features that I can extract from the pdb data below, but I couldn't find anything related to the Organism feature. How can I do it.
parser = MMCIFParser()
structure = parser.get_structure('6hx5', 'hx/6hx5.cif')
def cleandir(obj):
print(", ".join([a for a in dir(obj) if not a.startswith("_")]))
cleandir(structure)
Output:
add, atom_to_internal_coordinates, center_of_mass, child_dict, child_list, copy, detach_child, detach_parent, full_id, get_atoms, get_chains, get_full_id, get_id, get_iterator, get_level, get_list, get_models, get_parent, get_residues, has_id, header, id, insert, internal_to_atom_coordinates, level, parent, set_parent, transform, xtra
Briefly, can you share some code that can show that 6HX5 is homo_sapiens?